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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43924781_43925365_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43924781 - 43925365
Intron Length:
585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
GGTTTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
GTTTTCTTACAG
Flanking Amino Acid:
TGAPLLKEPDDLNRNPVLKD
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
80.5
34.9
Major BPS
78.6
0.71
1
78.6
31
Major PPT
83.1
0.75
0.9
76.5
37.7
Minor 5ss
49.9
-0
2.8
70.4
41.2
Minor BPS
57.3
0.09
1.8
64.96
42.7

Associated Gene:

Gene:
FGFR1OP
Ensembl Gene ID:
ENSAPLG00000010607
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011048
43922419 - 43940822
18404