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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43925476_43928073_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43925476 - 43928073
Intron Length:
2598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
ACTTGTTTATTT
Flanking Amino Acid:
PMPKPERTYGWKTETNKAGG
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.6
30.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
75.4
0.57
1
73.5
41.9
Minor 5ss
33.1
-1.9
3.2
40.3
40.2
Minor BPS
49.8
0.07
2
69.31
42.7

Associated Gene:

Gene:
FGFR1OP
Ensembl Gene ID:
ENSAPLG00000010607
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011048
43922419 - 43940822
18404