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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43928292_43930311_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43928292 - 43930311
Intron Length:
2020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATCT
Flanking Amino Acid:
RSNTHPIPSKVAESTQSDTS
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
77.4
0.62
1
75.8
38.3
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
80.3
1.03
1.4
95.73
30.7

Associated Gene:

Gene:
FGFR1OP
Ensembl Gene ID:
ENSAPLG00000010607
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011048
43922419 - 43940822
18404