Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43930396_43931146_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43930396 - 43931146

Intron Length:

751

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTAGT

5'SS Class:

strong_major

3'SS Sequence:

TGAAATGTTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATATAT

U12 Branch Point Sequence:

TTTGTGTGAAAT

Flanking Amino Acid:

QQKKISGSGEIAPVLSDSLC

Intron Amino Acid Position:

141

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.9

84.6

33.2

Major BPS

62.6

0.31

59.1

37.6

Major PPT

62.9

0.29

1.1

58.7

46.7

Minor 5ss

39.2

-1.2

2.8

51.8

Minor BPS

47.2

-0.1

2.3

73.47

43.3

Associated Gene:

Gene:

FGFR1OP

Ensembl Gene ID:

ENSAPLG00000010607

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011048

43922419 - 43940822

18404