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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43931282_43932726_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43931282 - 43932726
Intron Length:
1445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGATAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTACTTTTATTT
Flanking Amino Acid:
LAVFQPESSTLNGLDGRENL
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
71.8
34.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.6
0.82
0.6
81.5
30.5
Minor 5ss
41.8
-0.9
3.2
62
43.4
Minor BPS
57.1
0.3
1.5
73.47
37.9

Associated Gene:

Gene:
FGFR1OP
Ensembl Gene ID:
ENSAPLG00000010607
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011048
43922419 - 43940822
18404