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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43951258_43953550_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43951258 - 43953550
Intron Length:
2293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAATACTTGAGA
Flanking Amino Acid:
CWCTSDKFHQSDSHPHTWKK
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.8
22.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
91.6
0.94
0.6
84.9
29.9
Minor 5ss
39.6
-1.2
3.1
55.7
48.5
Minor BPS
49.6
-0
1.8
59.46
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010821
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011274
43951153 - 43970525
19373