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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43958425_43959340_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43958425 - 43959340
Intron Length:
916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGACTG
5'SS Class:
major
3'SS Sequence:
TTTGCTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TCTTTTTTGACT
Flanking Amino Acid:
PPEYWTIHGLWPDKSEECNR
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
60.8
43.6
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
84.3
0.77
0.8
77.4
36.9
Minor 5ss
41.8
-0.9
3.1
53.4
44.7
Minor BPS
75.9
0.9
1.1
85.97
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010821
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011274
43951153 - 43970525
19373