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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43959399_43960311_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43959399 - 43960311
Intron Length:
913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTATT
5'SS Class:
strong_major
3'SS Sequence:
GTGTTATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACTGATAA
Flanking Amino Acid:
TWHFNVTEIKDLMPDMRRYW
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
85.4
30.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
76.7
0.6
0.9
74.4
40.4
Minor 5ss
47.8
-0.2
2.5
68.9
41.7
Minor BPS
49.9
-0
2
71.1
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010821
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011274
43951153 - 43970525
19373