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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43960383_43964774_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43960383 - 43964774
Intron Length:
4392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTACGTCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTTCTGAAACT
Flanking Amino Acid:
IHSSLNRTHFWKHEWEKHGT
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
78.5
30.1
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
72.4
0.5
0.9
66.7
35.3
Minor 5ss
30.7
-2.2
2.5
31.6
35.9
Minor BPS
59.6
0.38
2.3
87.23
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010821
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011274
43951153 - 43970525
19373