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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43964889_43967017_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43964889 - 43967017
Intron Length:
2129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTTAG
5'SS Class:
major
3'SS Sequence:
ATCTTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TGTGTTCTATCT
Flanking Amino Acid:
LELYQHVNLNGYLQKAGIKP
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.6
40.3
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
83
0.74
0.9
80.7
36.3
Minor 5ss
45.2
-0.5
2.5
49
47.2
Minor BPS
46.8
-0.1
2
68.47
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010821
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011274
43951153 - 43970525
19373