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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43967354_43969249_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43967354 - 43969249
Intron Length:
1896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
CTCATGTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTCTCCACGATA
Flanking Amino Acid:
PKIQCLPPEEGEKAQTIGQI
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
73.4
0.53
0.9
64.9
41.2
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
50.7
0.02
1.9
67.57
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010821
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011274
43951153 - 43970525
19373