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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44215951_44223176_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44215951 - 44223176
Intron Length:
7226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TCTTGCTTTACA
Flanking Amino Acid:
GIIYRDLKPENILLDEEGHI
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83
23.8
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
85.9
0.81
0.8
79.7
32.4
Minor 5ss
41.2
-1
2.8
49.4
41.3
Minor BPS
60.9
0.34
2.1
75.18
42.3

Associated Gene:

Gene:
RPS6KA2
Ensembl Gene ID:
ENSAPLG00000011253
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011794
44118036 - 44279157
161122