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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44224135_44230647_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44224135 - 44230647
Intron Length:
6513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATGGAA
5'SS Class:
major
3'SS Sequence:
TGTTATTCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ACTTACTTGATT
Flanking Amino Acid:
ADWWSFGVLMFEMLTGSLPF
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
63.8
35.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.7
0.64
0.9
72.8
37.3
Minor 5ss
28.7
-2.4
3.5
34.4
43.8
Minor BPS
66.2
0.59
1.5
78.16
38.3

Associated Gene:

Gene:
RPS6KA2
Ensembl Gene ID:
ENSAPLG00000011253
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011794
44118036 - 44279157
161122