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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44231683_44240084_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44231683 - 44240084
Intron Length:
8402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGGGTG
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTATTTTGATT
Flanking Amino Acid:
LFKRNPSNRLGAGFDGVEEI
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
69.5
41.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
77.8
0.62
1
77.5
36.2
Minor 5ss
38.9
-1.2
3.6
54.5
49.7
Minor BPS
68.2
0.65
1.2
82.69
32.4

Associated Gene:

Gene:
RPS6KA2
Ensembl Gene ID:
ENSAPLG00000011253
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011794
44118036 - 44279157
161122