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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44240150_44248531_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44240150 - 44248531
Intron Length:
8382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTGTTGTTATGT
Flanking Amino Acid:
HPFFVTIDWNKLYRKEIKPP
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
74.4
36.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
82.2
0.72
0.8
77.5
31.3
Minor 5ss
34.5
-1.8
3.3
44.7
43.5
Minor BPS
46.1
-0.2
2.5
70.6
46.7

Associated Gene:

Gene:
RPS6KA2
Ensembl Gene ID:
ENSAPLG00000011253
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011794
44118036 - 44279157
161122