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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44248635_44252395_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44248635 - 44252395
Intron Length:
3761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
AGCTCATGAAAT
Flanking Amino Acid:
DPEFTSRTPTDSPGVPPSAN
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1.1
76.2
32.9
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
85.4
0.8
0.7
79.8
25.8
Minor 5ss
29.3
-2.4
2.9
33.7
41.5
Minor BPS
49.3
0.02
1.8
67.21
42.5

Associated Gene:

Gene:
RPS6KA2
Ensembl Gene ID:
ENSAPLG00000011253
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011794
44118036 - 44279157
161122