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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44254420_44267840_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44254420 - 44267840
Intron Length:
13421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
AGTACCTTACCA
Flanking Amino Acid:
KATETEFAVKIIDKSKRDPS
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
81.8
0.72
0.9
73.9
40.2
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
63.5
0.42
1.7
71.66
40

Associated Gene:

Gene:
RPS6KA2
Ensembl Gene ID:
ENSAPLG00000011253
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011794
44118036 - 44279157
161122