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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44269248_44270416_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44269248 - 44270416
Intron Length:
1169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGCATT
5'SS Class:
major
3'SS Sequence:
CTTTCTCATTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTGTTATTCACT
Flanking Amino Acid:
RTVDYLHSQGVVHRDLKPSN
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
74.7
41.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
71.7
0.49
1
76.2
31.7
Minor 5ss
47.3
-0.3
2.9
67.6
43.1
Minor BPS
57.2
0.31
2
80.43
41.6

Associated Gene:

Gene:
RPS6KA2
Ensembl Gene ID:
ENSAPLG00000011253
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011794
44118036 - 44279157
161122