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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44270579_44274701_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44270579 - 44274701
Intron Length:
4123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGATCG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTTTCCTTCACA
Flanking Amino Acid:
CYTANFVAPEVLKRQGYDAA
Intron Amino Acid Position:
582

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
66
40.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
72.7
0.51
0.8
69.1
30.5
Minor 5ss
36.9
-1.5
3.3
47.8
47.9
Minor BPS
75
0.78
1.7
83.03
38.2

Associated Gene:

Gene:
RPS6KA2
Ensembl Gene ID:
ENSAPLG00000011253
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011794
44118036 - 44279157
161122