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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44302483_44303149_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44302483 - 44303149
Intron Length:
667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGTTACTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTATTTTAAAAT
Flanking Amino Acid:
PEIISGRMTFALCCYSLTFM
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.5
0.75
0.9
77.3
36.6
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
52.5
0.16
1.7
70.2
40.7

Associated Gene:

Gene:
MPC1
Ensembl Gene ID:
ENSAPLG00000017567
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011630
44302440 - 44303298
859