Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44313357_44318916_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

44313357 - 44318916

Intron Length:

5560

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCCGCA

5'SS Class:

major

3'SS Sequence:

TCTTCCTGTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

GGTTTTGTAATA

Flanking Amino Acid:

DDEEQGLTAQVLDASTLSFS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.5

0.37

1.3

57.1

42.5

Major BPS

84.4

0.85

1.1

34.5

Major PPT

70.5

0.46

1.1

75.2

33.5

Minor 5ss

41.1

-1

3.4

47.2

Minor BPS

50.7

0.02

63.81

37.1

Associated Gene:

Gene:

SFT2D1

Ensembl Gene ID:

ENSAPLG00000012881

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013403

44313294 - 44327731

14438