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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44322501_44323784_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44322501 - 44323784
Intron Length:
1284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
CGTCTCCCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATTATTT
Flanking Amino Acid:
KRLVATIVMLLCLLLTLCAV
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
82.2
30.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
75.9
0.58
0.8
66
35.9
Minor 5ss
38.8
-1.3
2.9
47.7
43.2
Minor BPS
63.2
0.49
1.8
82.59
38.5

Associated Gene:

Gene:
SFT2D1
Ensembl Gene ID:
ENSAPLG00000012881
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013403
44313294 - 44327731
14438