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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44324614_44326011_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44324614 - 44326011
Intron Length:
1398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCAAAT
U12 Branch Point Sequence:
CTCTGTCAAATA
Flanking Amino Acid:
FCILQFLAMTWYSLSYIPFA
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
77.7
31.2
Major BPS
59.5
0.24
1.2
67.3
37.8
Major PPT
92.5
0.96
0.6
92.6
17.3
Minor 5ss
42.6
-0.8
3.1
56.7
42.1
Minor BPS
40.7
-0.7
2.2
50.53
42.1

Associated Gene:

Gene:
SFT2D1
Ensembl Gene ID:
ENSAPLG00000012881
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013403
44313294 - 44327731
14438