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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44326042_44327487_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44326042 - 44327487
Intron Length:
1446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTTAA
U12 Branch Point Sequence:
TTCTTTTTAAAG
Flanking Amino Acid:
WYSLSYIPFARDAVIKCFTS
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
58.3
0.21
1.1
49.4
37.6
Major PPT
83.7
0.76
0.9
85.8
26
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
65.8
0.36
1.5
67.62
40.4

Associated Gene:

Gene:
SFT2D1
Ensembl Gene ID:
ENSAPLG00000012881
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013403
44313294 - 44327731
14438