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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44374266_44376762_F

Intron Information:

Intron Rank:
124957
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
44374266 - 44376762
Intron Length:
2497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCACAACGCTCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTTCTTATGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.2
26.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
58.7
0.2
1
54.7
39.9
Minor 5ss
37.7
-1.4
2.7
46.1
36.1
Minor BPS
57.5
0.21
1.9
70.41
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017287
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047992
44373612 - 44377925
4314