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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44391309_44392103_F

Intron Information:

Intron Rank:
124953
Intron Class:
major
Intron Phase:
Intron Coordinates:
44391309 - 44392103
Intron Length:
795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
GTGTATCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTAAGAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
76.7
33.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
76.7
0.6
1
69.8
41.2
Minor 5ss
32
-2.1
2.6
34
34
Minor BPS
49
-0
1.9
70.28
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017287
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031360
44390940 - 44393400
2461