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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44392197_44393251_F

Intron Information:

Intron Rank:
124954
Intron Class:
major
Intron Phase:
Intron Coordinates:
44392197 - 44393251
Intron Length:
1055

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTTGG
5'SS Class:
major
3'SS Sequence:
TTTTTAACTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGTTTTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
64.1
42.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
85.7
0.8
0.8
83.3
31.9
Minor 5ss
45.8
-0.4
2.5
55
44.5
Minor BPS
83
1.11
1
92.13
30.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017287
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031360
44390940 - 44393400
2461