About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44419387_44419701_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44419387 - 44419701
Intron Length:
315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGGC
5'SS Class:
strong_major
3'SS Sequence:
TCGCTCTTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCCTGCTCACCT
Flanking Amino Acid:
LTNKLNGGGQIMLNSLHKYE
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
70.6
41.4
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
78.3
0.64
0.8
76.3
32.3
Minor 5ss
36.7
-1.5
3.3
50.2
46.4
Minor BPS
44.1
-0.3
2.2
59.08
50

Associated Gene:

Gene:
TBXT
Ensembl Gene ID:
ENSAPLG00000018385
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042664
44418522 - 44426355
7834