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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44419837_44420550_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44419837 - 44420550
Intron Length:
714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCGCG
5'SS Class:
major
3'SS Sequence:
TTGTTGCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTGCAAATAAAA
Flanking Amino Acid:
IAVTAYQNEEITALKIKYNP
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
62.4
42.4
Major BPS
80
0.75
1
78.6
31
Major PPT
79.8
0.67
0.9
77.9
36.6
Minor 5ss
42.7
-0.8
3.1
56.2
48.2
Minor BPS
43.2
-0.5
2
58.06
40.2

Associated Gene:

Gene:
TBXT
Ensembl Gene ID:
ENSAPLG00000018385
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042664
44418522 - 44426355
7834