About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44420771_44421732_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
44420771 - 44421732
Intron Length:
962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTATGTTTC
5'SS Class:
weak_major
3'SS Sequence:
TGCTTTCTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TCGTACAAAACT
Flanking Amino Acid:
GDNQQSGYSQLGSWLIPGTG
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.43
1.1
67.9
38.2
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
81.1
0.7
0.8
75.8
32.9
Minor 5ss
60
0.34
2.2
70.5
40.1
Minor BPS
47.9
-0
2.1
69.64
46.8

Associated Gene:

Gene:
TBXT
Ensembl Gene ID:
ENSAPLG00000018385
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042664
44418522 - 44426355
7834