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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44421910_44422797_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44421910 - 44422797
Intron Length:
888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
TCTAGTGTAAGT
Flanking Amino Acid:
NPYTHRNNSPTAYADNSSAC
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
75.5
40.6
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
85.2
0.79
0.8
83.9
31.1
Minor 5ss
37.7
-1.4
3
50.6
39.9
Minor BPS
42
-0.5
2.5
63.46
47.2

Associated Gene:

Gene:
TBXT
Ensembl Gene ID:
ENSAPLG00000018385
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042664
44418522 - 44426355
7834