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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44422931_44424675_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44422931 - 44424675
Intron Length:
1745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCATC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TCACTGATAACC
Flanking Amino Acid:
SHSTGTATGSSQYPNLWSVS
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
76.2
39.9
Major BPS
71.2
0.53
1
61
37.5
Major PPT
82.7
0.74
0.9
73.5
41.8
Minor 5ss
42.5
-0.8
3.2
59.7
45.1
Minor BPS
44.8
-0.4
2.2
57.12
41.3

Associated Gene:

Gene:
TBXT
Ensembl Gene ID:
ENSAPLG00000018385
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042664
44418522 - 44426355
7834