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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4460661_4464268_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4460661 - 4464268
Intron Length:
3608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTAG
5'SS Class:
major
3'SS Sequence:
AACTTGTTTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TTTTCCCAAACT
Flanking Amino Acid:
NCLYHGEGAQQRMAQEVLTH
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.5
38.9
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
71.8
0.49
0.9
65.2
40.4
Minor 5ss
36.1
-1.6
3.2
46.5
48.8
Minor BPS
69
0.68
2
92.91
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030289
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025028
4460535 - 4477859
17325