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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44671896_44728092_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44671896 - 44728092
Intron Length:
56197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AATCGATTAATG
Flanking Amino Acid:
EKNCNYRCWACLTDEKVKAY
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
78.2
36.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
93.2
0.97
0.6
88.8
20.4
Minor 5ss
38.7
-1.3
3.4
53.8
43.6
Minor BPS
47
-0.3
2
53.94
40.8

Associated Gene:

Gene:
PDE10A
Ensembl Gene ID:
ENSAPLG00000009479
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009920
44671799 - 44832319
160521