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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44759198_44770408_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44759198 - 44770408
Intron Length:
11211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTCACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTGCTTCACT
Flanking Amino Acid:
DESTPKEVSRYQDTNMQGVV
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
78.8
35.5
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
73.2
0.52
0.9
67.5
39
Minor 5ss
34.9
-1.7
3.2
42.4
44.3
Minor BPS
68.1
0.65
2.2
91.67
38.1

Associated Gene:

Gene:
PDE10A
Ensembl Gene ID:
ENSAPLG00000009479
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037270
44654018 - 44832319
178302
ENSAPLT00000009920
44671799 - 44832319
160521
ENSAPLT00000044586
44654018 - 44833393
179376