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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4476517_4476654_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4476517 - 4476654
Intron Length:
138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAAGTAT
5'SS Class:
major
3'SS Sequence:
AGACTTCATGAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TTAGACTTCATG
Flanking Amino Acid:
TSSDPTCVEVILNLILKQEW
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1
67.8
33.1
Major BPS
75.8
0.64
1
65.8
41
Major PPT
54.6
0.1
1.1
53.9
40.1
Minor 5ss
34
-1.8
3.5
45.9
44
Minor BPS
47.2
-0.3
2.1
56.85
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030289
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025028
4460535 - 4477859
17325