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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4477415_4477505_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4477415 - 4477505
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CAGACTTTAATG
Flanking Amino Acid:
QIFQLCQFVMENSQNAPLVH
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
83
0.74
0.9
76.5
37.7
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
56.2
0.06
1.4
52.68
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030289
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025028
4460535 - 4477859
17325