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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4477626_4477718_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4477626 - 4477718
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTATG
5'SS Class:
major
3'SS Sequence:
CTTTTCTCAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
CTTTTCTCAATA
Flanking Amino Acid:
TKLISTLIYKFLNVPMFRNV
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76.3
38.9
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
77.1
0.61
0.8
74.2
29.5
Minor 5ss
45.5
-0.5
2.5
59.8
44.7
Minor BPS
67.1
0.53
1.5
74.85
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030289
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025028
4460535 - 4477859
17325