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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44791613_44792886_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44791613 - 44792886
Intron Length:
1274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TGTTCTTCCACA
Flanking Amino Acid:
WASVAIHQVQVCRGLAKQTE
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79
35.3
Major BPS
68
0.45
1
57.8
39
Major PPT
81.6
0.71
0.8
76.4
32.3
Minor 5ss
38
-1.4
3.3
49.5
41.1
Minor BPS
55.9
0.18
2
72.25
39.9

Associated Gene:

Gene:
PDE10A
Ensembl Gene ID:
ENSAPLG00000009479
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044586
44654018 - 44833393
179376
ENSAPLT00000037270
44654018 - 44832319
178302
ENSAPLT00000009920
44671799 - 44832319
160521