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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44798667_44800693_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44798667 - 44800693
Intron Length:
2027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CATTTTTTATTT
Flanking Amino Acid:
KPVFKKTKEIRFSIEKGIAG
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
84.3
26.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.2
0.88
0.7
85.2
29.3
Minor 5ss
34
-1.8
3.5
46.9
48.4
Minor BPS
58.5
0.34
1.6
71.82
40.2

Associated Gene:

Gene:
PDE10A
Ensembl Gene ID:
ENSAPLG00000009479
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037270
44654018 - 44832319
178302
ENSAPLT00000009920
44671799 - 44832319
160521
ENSAPLT00000044586
44654018 - 44833393
179376