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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44800787_44801459_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44800787 - 44801459
Intron Length:
673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCATGT
5'SS Class:
major
3'SS Sequence:
TTTGGCTCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTCTTGTTT
Flanking Amino Acid:
PDAYADPRFNREVDLYTGYT
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.2
63.4
43.8
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
79.5
0.66
0.9
70.1
41.4
Minor 5ss
43.8
-0.7
3.3
65.2
46
Minor BPS
49.2
0.02
3.5
86.06
34.4

Associated Gene:

Gene:
PDE10A
Ensembl Gene ID:
ENSAPLG00000009479
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044586
44654018 - 44833393
179376
ENSAPLT00000037270
44654018 - 44832319
178302
ENSAPLT00000009920
44671799 - 44832319
160521