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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44803274_44805182_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44803274 - 44805182
Intron Length:
1909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
ACTTTCTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTTCTTACCA
Flanking Amino Acid:
LPPHIYKEIELYHFDISPYE
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.1
74.8
35.3
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
78.7
0.65
0.7
77.5
30.5
Minor 5ss
39.2
-1.2
3.4
59
45.5
Minor BPS
76.8
0.84
1.5
86.69
32.1

Associated Gene:

Gene:
PDE10A
Ensembl Gene ID:
ENSAPLG00000009479
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037270
44654018 - 44832319
178302
ENSAPLT00000009920
44671799 - 44832319
160521
ENSAPLT00000044586
44654018 - 44833393
179376