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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44805267_44808465_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44805267 - 44808465
Intron Length:
3199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGAACT
5'SS Class:
major
3'SS Sequence:
CATTATTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AATTCATTATTT
Flanking Amino Acid:
YMVHQSCGTACFELEKLCRF
Intron Amino Acid Position:
512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
72.6
36.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.8
0.63
0.9
69.7
40.9
Minor 5ss
42.3
-0.8
2.8
56
42.3
Minor BPS
58.7
0.35
1.8
77.1
39.2

Associated Gene:

Gene:
PDE10A
Ensembl Gene ID:
ENSAPLG00000009479
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044586
44654018 - 44833393
179376
ENSAPLT00000037270
44654018 - 44832319
178302
ENSAPLT00000009920
44671799 - 44832319
160521