Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44808617_44810731_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

44808617 - 44810731

Intron Length:

2115

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGTGAG

5'SS Class:

strong_major

3'SS Sequence:

CACTTTTTAATAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAC

U12 Branch Point Sequence:

CACTTTTTAATA

Flanking Amino Acid:

NNQGLFTDLERKGLLVACLC

Intron Amino Acid Position:

563

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.9

0.82

72.3

39.5

Major BPS

72.7

0.56

30.1

Major PPT

72.4

0.51

0.9

69.2

35.4

Minor 5ss

30.6

-2.2

3.4

39.1

46.7

Minor BPS

63.4

0.42

1.2

63.03

38.3

Associated Gene:

Gene:

PDE10A

Ensembl Gene ID:

ENSAPLG00000009479

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037270

44654018 - 44832319

178302

ENSAPLT00000009920

44671799 - 44832319

160521

ENSAPLT00000044586

44654018 - 44833393

179376