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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44814348_44817018_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44814348 - 44817018
Intron Length:
2671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCAG
5'SS Class:
major
3'SS Sequence:
TGTTTTATTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTTTACCAAACT
Flanking Amino Acid:
GALNLKNQAHRDRVIGLMMT
Intron Amino Acid Position:
672

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
62.9
43.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.7
0.71
0.8
74.7
40
Minor 5ss
29.5
-2.4
3.3
37.6
47.1
Minor BPS
50.2
0.08
2.2
77.62
44.4

Associated Gene:

Gene:
PDE10A
Ensembl Gene ID:
ENSAPLG00000009479
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044586
44654018 - 44833393
179376
ENSAPLT00000037270
44654018 - 44832319
178302
ENSAPLT00000009920
44671799 - 44832319
160521