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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44817131_44819800_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44817131 - 44819800
Intron Length:
2670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TAATCCTAATCT
Flanking Amino Acid:
NDIYAEFWAEGDEMKKTGIQ
Intron Amino Acid Position:
710

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.8
31.8
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
88.6
0.87
0.7
81.3
36.4
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
59.4
0.37
2
78.2
43.7

Associated Gene:

Gene:
PDE10A
Ensembl Gene ID:
ENSAPLG00000009479
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044586
44654018 - 44833393
179376
ENSAPLT00000037270
44654018 - 44832319
178302
ENSAPLT00000009920
44671799 - 44832319
160521