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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44819882_44825915_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44819882 - 44825915
Intron Length:
6034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGAACT
5'SS Class:
major
3'SS Sequence:
CTGTTTTTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATTG
Flanking Amino Acid:
DKKDEVPQGQIGFYNAVAIP
Intron Amino Acid Position:
737

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
73.6
35
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.5
0.66
0.8
75.8
32.8
Minor 5ss
43.9
-0.7
2.8
59.4
38.9
Minor BPS
56.8
0.08
1.6
61.91
41.3

Associated Gene:

Gene:
PDE10A
Ensembl Gene ID:
ENSAPLG00000009479
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037270
44654018 - 44832319
178302
ENSAPLT00000009920
44671799 - 44832319
160521
ENSAPLT00000044586
44654018 - 44833393
179376