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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44838846_44851217_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44838846 - 44851217
Intron Length:
12372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGATT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTTATAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATTAAGT
Flanking Amino Acid:
SLKRKECTIPACGTRIHFIM
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
84.9
32.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
71.2
0.48
1.1
77.1
35.8
Minor 5ss
37.6
-1.4
3.5
56.9
47.4
Minor BPS
61.8
0.45
1.9
81.66
39.6

Associated Gene:

Gene:
C6orf118
Ensembl Gene ID:
ENSAPLG00000010023
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010435
44838809 - 44871455
32647