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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4486024_4486859_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4486024 - 4486859
Intron Length:
836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCATGG
5'SS Class:
weak_major
3'SS Sequence:
TGTTATATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
AAACTAATAATA
Flanking Amino Acid:
EKRFLVTVIKDLLGLCEQKR
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.2
56
43.9
Major BPS
80
0.75
1
78.6
31
Major PPT
76.4
0.59
0.9
70.9
39.4
Minor 5ss
49
-0.1
2.6
65.2
46
Minor BPS
44.4
-0.4
1.7
51.73
32.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004008
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004184
4485979 - 4494421
8443