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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44865559_44866584_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44865559 - 44866584
Intron Length:
1026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTATTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TATTTCTCAAAA
Flanking Amino Acid:
SNMFLQGQIKEVEGHITGIL
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
86.8
22.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
88.3
0.86
0.7
83.4
31.4
Minor 5ss
43.6
-0.7
2.9
58.5
40.4
Minor BPS
63.7
0.43
1.6
74.19
36.8

Associated Gene:

Gene:
C6orf118
Ensembl Gene ID:
ENSAPLG00000010023
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010435
44838809 - 44871455
32647